Difference between revisions of "Noncrystallographic symmetry"
From Online Dictionary of Crystallography
BrianMcMahon (talk | contribs) |
|||
| Line 1: | Line 1: | ||
| + | <font color="blue">Symétrie non cristallographique</font> (''Fr''); <font color="black">Simmetria non cristallografica</font> (''It''); <font color="purple">非結晶学的対称性</font> (''Ja'') | ||
| + | |||
== Definition == | == Definition == | ||
| − | A symmetry | + | A symmetry operation that is not compatible with the periodicity of a [[crystal pattern]] is called a '''noncrystallographic symmetry'''. Rotations other than 1, 2, 3, 4, and 6 (in E<sup>2</sup> and E<sup>3</sup>) belong to this type of symmetry. Rotations 5, 8, 10 and 12 are compatible with a translation in higher-dimensional spaces, but they are commonly considered noncrystallographic. For example、in quasicrystals fivefold or tenfold rotational axes are incapable of tiling space through the application of three-dimensional lattice translations, but they act as normal symmetry axes in a higher-dimensional space. |
== Discussion == | == Discussion == | ||
| − | + | In biological crystallography, the term 'noncrystallographic symmetry' is often, but improperly, used to indicate a symmetry relationship between similar subunits within the crystallographic asymmetric unit. This use comes from the fact that the operation required to superimpose one subunit on another is similar to a [[space group]] operation, but it operates only over a local volume, and the superposition may be inexact because the subunits are in different environments. The 'subunit' can be a molecular aggregate, a single molecule, a monomer unit of an oligomeric molecule, or a fragment of a molecule. The superposition is inexact because protein subunits in different environments are never identical. At the very least, surface side chains are differently ordered, and solvation is different because of different interactions with adjacent subunits. | |
| + | This use of the term 'noncrystallographic symmetry' is improper for two reasons: | ||
| − | + | #a symmetry operation acting on a subspace of the crystal space is called a [[partial operation]]; it is a space [[groupoid]] operation; | |
| + | #an operation that superposes two objects only approximately is called a [[pseudo-symmetry]] operation. | ||
| − | |||
| − | + | ==See also== | |
| + | *Section 10.1.4 of ''International Tables for Crystallography, Volume A'' | ||
[[Category:Fundamental crystallography]] | [[Category:Fundamental crystallography]] | ||
[[Category:Biological crystallography]] | [[Category:Biological crystallography]] | ||
Revision as of 10:14, 9 April 2008
Symétrie non cristallographique (Fr); Simmetria non cristallografica (It); 非結晶学的対称性 (Ja)
Definition
A symmetry operation that is not compatible with the periodicity of a crystal pattern is called a noncrystallographic symmetry. Rotations other than 1, 2, 3, 4, and 6 (in E2 and E3) belong to this type of symmetry. Rotations 5, 8, 10 and 12 are compatible with a translation in higher-dimensional spaces, but they are commonly considered noncrystallographic. For example、in quasicrystals fivefold or tenfold rotational axes are incapable of tiling space through the application of three-dimensional lattice translations, but they act as normal symmetry axes in a higher-dimensional space.
Discussion
In biological crystallography, the term 'noncrystallographic symmetry' is often, but improperly, used to indicate a symmetry relationship between similar subunits within the crystallographic asymmetric unit. This use comes from the fact that the operation required to superimpose one subunit on another is similar to a space group operation, but it operates only over a local volume, and the superposition may be inexact because the subunits are in different environments. The 'subunit' can be a molecular aggregate, a single molecule, a monomer unit of an oligomeric molecule, or a fragment of a molecule. The superposition is inexact because protein subunits in different environments are never identical. At the very least, surface side chains are differently ordered, and solvation is different because of different interactions with adjacent subunits. This use of the term 'noncrystallographic symmetry' is improper for two reasons:
- a symmetry operation acting on a subspace of the crystal space is called a partial operation; it is a space groupoid operation;
- an operation that superposes two objects only approximately is called a pseudo-symmetry operation.
See also
- Section 10.1.4 of International Tables for Crystallography, Volume A